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GenMAPP.org
is an academic organization that develops
and supports GenMAPP (Gene Map Annotator and Pathway
Profiler), a computer application designed to visualize
gene expression data on maps representing biological
pathways and groupings of genes.
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We
are developing a newly redesigned version of GenMAPP
to meet current challenges for integrating, visualizing,
and analyzing pathway data. This new version, called
GenMAPP-CS, is being developed as an open-source, Java-based
program in collaboration with the Cytoscape
Consortium and BiGCaT
Bioinformatics. GenMAPP-CS will incorporate core
capabilities of Cytoscape, while adding GenMAPP-specific
functionality. To learn more about specific aims for
the GenMAPP-CS project, please visit our
GenMAPP-CS wiki.
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PathVisio
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PathVisio is a
Java tool for displaying and editing pathways with a
GenMAPP-like interface. PathVisio is developed as a
collaboration with BiGCaT Bioinformatics.
PathVisio supports import and export of pathways in
GenMAPP format, as well as in the GPML (XML) format.
Future versions of PathVisio will have the flexibility
to display many different types of data, such as
microarray and proteomics data, on familiar biological
pathways.
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WikiPathways |
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In
the tradition of Wikipedia and other wiki platforms,
Wikipathways
is an open, public space for content editing dedicated
to biological pathways. WikiPathways is the first
pathway database with wiki functionality and will now
serve as the primary source of GenMAPP pathways.
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Google Summer of Code |
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GenMAPP participates as an open source organization the
Google Summer of Code. To find out more about
the GenMAPP Summer of Code projects, visit our GSoC wiki pages for
2007,
2008.
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Leader |
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Bruce
Conklin 1,2 |
| Software
Design Group |
| Current
Contributors |
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Kristina
Hanspers 1 |
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Allan
Kuchinsky 8 |
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Alex
Pico 1,2 |
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Karen
Vranizan 1,3 |
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Nathan
Salomonis 1,2 |
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Jeff
Lawlor 7 |
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Steven
C. Lawlor 7 |
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| Alumni |
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Scott
Doniger 6 |
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Lynn
Ferrante 1,5 |
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Kam
Dahlquist 4 |
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Alex Zambon
9 |
1) J. David Gladstone Institutes, 2) University
of California San Francisco, 3) University of California
Berkeley, 4) Loyola Marymount University, 5) San
Francisco State University, 6) Washington University,
7) The Curtis Company 8) Agilent Technologies 9)
University of California San Diego
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Website Development |
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Nathan
Salomonis |
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Alex
Pico |
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Erik
Ellestad |
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Richard
Trott |
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Kristina Hanspers |
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