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The
GenMAPP Gene Databases are species-specific collections
of genes and annotation. Click on the links below
for details and graphs on Gene Database content.
All Gene Databases can be downloaded using the
Data Acquisition tool in GenMAPP.
Figure 1: Gene ID systems
represented in current Gene Databases
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Human |
Mouse |
Rat |
Dog |
Cattle |
Chicken |
Yeast |
Zebrafish |
Fruit
fly |
Worm |
| Ensembl |
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| Entrez
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| UniProt |
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| Unigene |
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| RefSeq
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| Affymetrix |
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| MGI |
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| HUGO |
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| RGD |
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| SGD |
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| ZFIN |
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| FlyBase |
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| WormBase |
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| PDB |
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| GeneOntology |
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| Pfam |
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| OMIM |
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| InterPro |
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| EMBL |
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Figure 2: Coverage of genes
on MAPPs in current Gene Databases
Figure 3: Visualization
of the primary ID systems supported by GenMAPP
for the human gene database (Hs-Std_20051114.gdb).
We compile up-to-date Gene IDs and relationships
from a number of sources, including Ensembl, Affymetrix
and NCBI (EntrezGene), in order to maximize the
integrity and connectivity of the data. Notice
how every ID system is connected to every other
ID system (except Affy - PDB). The largest node
(Affy) represents 73,994 unique probe set IDs
stored in the GenMAPP human gene database; the
smallest (PDB) represents 6,246 IDs. The thickest
link between two ID systems (Affy-UniProt) represents
146,647 connections; while the thinnest (UniGene-PDB)
represents 4,419 connections. Figure created using
Cytoscape.
Figure 4: Progress of the
total number of unique gene IDs in the human Gene
Database.
Figure 5: Progress of the
total number of ID relationships IDs in the human
Gene Database.
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