GO-Elite Home Page
	Tutorial
Section 1: Introduction
	Software Description
	Documentation
	Interfaces
	Installation
	Program Overview
Section 2: Running GO-Elite
	Analysis in GenMAPP-CS
	GO-Elite Input Files
	Preparing Your Gene Lists
	Running GO-Elite Online
	Running GO-Elite Locally Using the Graphical User Interface
	Running GO-Elite Locally Using the Command-Line Option
Section 3: Interpreting GO-Elite Results
	GO-Elite Output Files
	Downstream Analyses
Section 4: Algorithms
	GO and Pathway Over-Representation Analysis
	Multiple Identifier Mapping for ORA
	Filtering of ORA Results
	Pruning of Ontology Relationships
	Redundant Content Reporting
Section 5: GO-Elite Databases
	Database Files Overview
	Official GO-Elite Databases
	Available Resources
	Updating Available Resources
	Modifying Species Databases
	Adding Ontology Structure Annotations
	Updating Gene Ontology Relationships from EntrezGene
	Updating Affymetrix Relationships
	Customized Ensembl Builds
	Adding Species Support
	System Codes
References