Collagen Alpha 1(III) Chain

MGI MGI:88453

MGI SwissProt PhenOntology Affy Unigene RefSeq GeneOntology

MGI Top

ID: MGI:88453
Symbol: Col3a1
Name: procollagen, type III, alpha 1

ID: CA13_MOUSE
Accession: P08121, Q61429, Q9CRN7
Name: COL3A1
Species: Mus musculus
Protein: Collagen alpha 1(III) chain precursor.
Functions: COLLAGEN TYPE III OCCURS IN MOST SOFT CONNECTIVE TISSUES ALONG WITH TYPE I COLLAGEN.
ID: Q61369
Accession: Q61369
Name: COL3A1
Species: Mus musculus
Protein: Alpha-1 type III collagen (Fragment).
ID: Q8BJU6
Accession: Q8BJU6
Name: COL3A1
Species: Mus musculus
Protein: Collagen alpha 1 (Fragment).
ID: Q8BKY2
Accession: Q8BKY2
Name: COL3A1
Species: Mus musculus
Protein: Collagen alpha 1.
ID: Q8BLW4
Accession: Q8BLW4
Name: COL3A1
Species: Mus musculus
Protein: Collagen alpha 1.
ID: Q8BMR6
Accession: Q8BMR6
Name: COL3A1
Species: Mus musculus
Protein: Collagen alpha 1 (Fragment).
ID: Q9CSB7
Accession: Q9CSB7
Name: COL3A1
Species: Mus musculus
Protein: Procollagen, type III, alpha 1 (Fragment).

PhenOntology Top

ID: MP:0002081
Name: survival: perinatal lethality
ID: MP:0002083
Name: survival: premature death
ID: MP:0002089
Name: growth/weight/body size abnormality: postnatal
ID: MP:0002096
Name: skin: texture/condition anomalies
ID: MP:0002127
Name: heart/cardiovascular system: dysmorphology
ID: MP:0002141
Name: digestive system: dysmorphology

Affy Top

ID: 102990_at
ID: 1427883_a_at
ID: 1427884_at
ID: 1450567_a_at
ID: 161984_f_at
ID: 95410_s_at
ID: 98331_at
ID: aa259937_s_at
ID: x52046_s_at

Unigene Top

ID: Mm.234850
Title: procollagen, type III, alpha 1
Gene: Col3a1
Cytoband: 1 21.1 cM
ID: Mm.2423
Title: procollagen, type II, alpha 1
Gene: Col2a1
Cytoband: 15 54.5 cM

RefSeq Top

ID: NM_009930
ID: NM_031163

GeneOntology Top

ID: 0001527
Name: microfibril
ID: 0005201
Name: extracellular matrix structural constituent
ID: 0005578
Name: extracellular matrix
ID: 0005581
Name: collagen
ID: 0007155
Name: cell adhesion
ID: 0030020
Name: extracellular matrix structural constituent conferring tensile strength activity

Expression Profile Top

Gene ID

aa259937_s_at

x52046_s_at

non-pregnant avg

657.16

14646.26

14days avg

1056.22

15818.32

14days fold

1.61

1.08

16days avg

1117.77

15278.52

16days fold

1.7

1.04

16v14 fold

1.06

-1.04

17days avg

827.11

13734.48

17days fold

1.26

-1.07

17v16 fold

-1.35

-1.11

18days avg

579.06

13119.07

18days fold

-1.13

-1.12

18v14 fold

-1.82

-1.21

18v16 fold

-1.93

-1.16

18v17 fold

-1.43

-1.05

6hrs avg

496.47

10849.66

6hrs fold

-1.32

-1.35

6v18 fold

-1.17

-1.21

24hrs avg

327.77

8299.01

24hrs fold

-2

-1.76

24v18 fold

-1.77

-1.58

24v6 fold

-1.51

-1.31

GenBank

AA259937

X52046

GenMAPP ID

P08121

Gene_Symbol

Col3a1

Ms10w

MapLocation

1 21.1 cM

NULL

f-rawp

0.0001

f-adjp

0.0511

0.0775

gestation >20p

post>20p

gestation<-20p

post<-20p

Sum all

np fold-log

14d fold-log

0.68

0.11

16d fold-log

0.77

0.06

17d fold-log

0.33

-0.09

18d fold-log

-0.18

-0.16

6hrs fold-log

-0.4

-0.43

24hrs fold-log

-1

-0.82

final cluster

8.10E+15

8.30E+15

main cluster

81000000

83000000

2nd level cluster

main/medoid order

4228

4364

Mediod

total in cluster

164

final order

4225

4398

HOPACH Pattern

Up Quiescence/Down Postpartum

Abs-main cluster

14200

63000

Abs final order

462

3861

Abs-Pattern

NULL

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